Basic Information
Locus ID:
gene-BS78_05G145100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase RNF13-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 33251452 | 33252153 | + | gene-BS78_05G145100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 26,611.58 Da | 49.27 | 104.16 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 212 | 1.17E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 211 | 8.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 12.651561 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004959421.1 | E3 ubiquitin-protein ligase RNF181 homolog [Setaria italica] | 0 |
| TrEMBL | A0A5J9WL50 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G327700, gene-BS78_05G145100 ... |