Basic Information
Locus ID:
gene-BS78_05G135600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 28116251 | 28123936 | - | gene-BS78_05G135600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 99,193.07 Da | 35.18 | 91.57 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 593 | 865 | 3.27846E-89 | - |
| Pfam | PF13855 | Leucine rich repeat | 376 | 433 | 1.5E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 590 | 860 | 1.9E-50 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 310 | 7.82E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 348 | 440 | 3.64E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 570 | 862 | 2.23E-80 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 335 | 448 | 1.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 549 | 663 | 2.6E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 324 | 7.9E-71 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 664 | 884 | 9.4E-59 | - |
| SMART | SM00369 | LRR_typ_2 | 396 | 419 | 3.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 192 | 215 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 267 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 119 | 142 | 0.69 | IPR003591 |
| SMART | SM00220 | serkin_6 | 587 | 866 | 2.3E-47 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 420 | 442 | 86.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 398 | 419 | 7.288416 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 587 | 866 | 41.247971 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 593 | 614 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 711 | 723 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 420 | 433 | 4.9E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 399 | 412 | 4.9E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24650.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_004979222.1 | receptor-like kinase TMK4 [Setaria italica] | 0 |
| Q2R560 | Receptor protein kinase WSS1 OS=Oryza sativa subsp. japonica OX=39947 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368S6P4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G112900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1153, CH04.1339 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0351990, gene-QOZ80_9AG0681760 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067050 |
| Poaceae | Oryza coarctata | 2 | Oco21G005150, Oco22G006180 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g41430.1, LOC_Os11g26130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G135600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G021660, Chr07G018000, Chr31G004400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G266400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG023700, gene_TRIDC4BG025710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G147700.1, TraesCS4B02G165600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112700_P001, Zm00001eb169350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38701 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18762 |