Basic Information
Locus ID:
gene-BS78_05G127800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Cleavage site for pathogenic type III effector avirulence factor Avr
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19831549 | 19835025 | + | gene-BS78_05G127800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.94 | 17,444.12 Da | 61.25 | 36.58 | -1.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05627 | Cleavage site for pathogenic type III effector avirulence factor Avr | 86 | 121 | 2.4E-14 | IPR008700 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 105 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004979267.1 | uncharacterized protein LOC101774022 [Setaria italica] | 0 |
| TrEMBL | A0A368S8H7 | AvrRpt-cleavage domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G120200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH04.1222, CH04.1416 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0680700 |
| Poaceae | Oryza coarctata | 3 | Oco21G005600, Oco21G005660, Oco22G006710 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g29210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G127800 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G004820 |
| Poaceae | Zea mays | 1 | Zm00001eb169750_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38581 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18814 |