Basic Information
Locus ID:
gene-BS78_05G127000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 18864799 | 18879365 | - | gene-BS78_05G127000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 103,761.15 Da | 48.07 | 85.47 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 727 | 889 | 2.17797E-60 | - |
| Pfam | PF06337 | DUSP domain | 33 | 136 | 9.2E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 888 | 1.9E-86 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 490 | 631 | 5.4E-8 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 314 | 891 | 1.14E-109 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 136 | 5.62E-27 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 149 | 234 | 2.4E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 304 | 536 | 3.4E-64 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 662 | 898 | 2.6E-58 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 148 | 2.2E-34 | - |
| SMART | SM00695 | dusp | 29 | 138 | 7.1E-30 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 10 | 135 | 19.281698 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 316 | 891 | 57.369884 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 317 | 332 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 833 | 850 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_004979260.1 | ubiquitin carboxyl-terminal hydrolase 5 [Setaria italica] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A368S6P9 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_8G116100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology