Basic Information
Locus ID:
gene-BS78_05G125300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 18311592 | 18321183 | - | gene-BS78_05G125300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 87,189.58 Da | 32.60 | 87.13 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 476 | 745 | 5.95865E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 499 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 592 | 629 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 678 | 715 | 3.5E-6 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 39 | 272 | 1.2E-47 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 329 | 415 | 3.4E-12 | IPR000535 |
| Pfam | PF00400 | WD domain, G-beta repeat | 552 | 584 | 0.059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 634 | 673 | 4.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 473 | 744 | 4.43E-62 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 25 | 307 | 6.61E-69 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 324 | 417 | 1.05E-15 | IPR008962 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 7 | 109 | 2.2E-22 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 324 | 458 | 1.1E-20 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 127 | 323 | 3.8E-48 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 757 | 4.0E-90 | IPR015943 |
| SMART | SM00220 | serkin_6 | 37 | 307 | 1.6E-35 | IPR000719 |
| SMART | SM00320 | WD40_4 | 632 | 673 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 7.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 629 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 502 | 542 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 715 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 499 | 0.44 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 683 | 715 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 596 | 632 | 9.124694 | - |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 328 | 453 | 15.302483 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 639 | 682 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 639 | 675 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 683 | 715 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 552 | 593 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 638 | 11.343905 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 311 | 36.795761 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 552 | 588 | 8.518333 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 571 | 585 | - | IPR019775 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 65 | - | IPR017441 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 660 | 674 | - | IPR019775 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 168 | 180 | - | IPR008271 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 702 | 716 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 660 | 674 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 571 | 585 | 1.0E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_044373850.1 | CBL-interacting serine/threonine-protein kinase 7-like [Triticum aestivum] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A9BN88 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology