Basic Information
Locus ID:
gene-BS78_05G121900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 17253489 | 17263254 | - | gene-BS78_05G121900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 86,976.69 Da | 36.31 | 83.07 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 565 | 6.0E-5 | IPR001680 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 316 | 383 | 5.8E-9 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 18 | 295 | 3.5E-50 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 650 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 655 | 692 | 8.6E-8 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 331 | 4.18E-67 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 460 | 729 | 5.66E-49 | IPR036322 |
| SUPERFAMILY | SSF49354 | PapD-like | 314 | 398 | 6.02E-12 | IPR008962 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 313 | 9.1E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 89 | 1.2E-22 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 314 | 443 | 4.1E-15 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 456 | 735 | 2.1E-71 | IPR015943 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 610 | 650 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 607 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 565 | 2.3E-7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 18 | 296 | 4.6E-32 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 533 | 565 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 692 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 565 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 302 | 36.68269 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 315 | 440 | 13.07311 | IPR000535 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 660 | 692 | 11.075592 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 47 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 150 | 162 | - | IPR008271 |
| Coils | Coil | Coil | 750 | 752 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 12. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_015616462.1 | uncharacterized protein LOC4350061 [Oryza sativa Japonica Group] | 0 |
| O65472 | Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 | 0 | |
| TrEMBL | A0A811P5A6 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS22110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology