halophFGD

Basic Information

Locus ID: gene-BS78_05G120800

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: F-box domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	16845509	16847330	+	gene-BS78_05G120800

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.54	48,352.86 Da	54.34	77.09	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	342	400	2.1E-8	IPR005174
Pfam	PF12937	F-box-like	18	52	5.2E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	84	5.89E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	18	54	9.1E-7	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025828336.1	uncharacterized protein LOC112903308 [Panicum hallii]	0
TrEMBL	A0A2S3IDB8	DUF295 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_8G073400 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	54	AH02.2144, AH02.2145, AH02.2146, AH02.2612, AH02.2620 ... AH04.866, AH04.867, AH04.868, AH05.1334, AH05.1335, AH05.1343, AH05.1344, AH05.1349, AH05.2587, AH05.2588, AH07.1962, AH08.1677, AH08.855, AH09.622, BH01.2799, BH02.2219, BH02.2220, BH02.2707, BH04.1362, BH04.830, BH04.834, BH05.1507, BH05.1509, BH05.1514, BH05.1516, BH05.1517, BH05.1518, BH05.1522, BH05.1523, BH07.1548, BH08.1733, CH01.2151, CH02.2060, CH02.2372, CH03.4619, CH04.1669, CH04.842, CH05.1706, CH05.1708, CH05.1714, CH05.1715, CH05.1716, CH05.1717, CH05.1721, CH05.1722, CH06.2911, CH07.1310, CH08.1868, Contig328.18
Poaceae	Eleusine coracana subsp. coracana	24	gene-QOZ80_1AG0021880, gene-QOZ80_1AG0022110 ... gene-QOZ80_1AG0022120, gene-QOZ80_1AG0022170, gene-QOZ80_1AG0022180, gene-QOZ80_1BG0071840, gene-QOZ80_1BG0072280, gene-QOZ80_1BG0072290, gene-QOZ80_1BG0072300, gene-QOZ80_2AG0111150, gene-QOZ80_2AG0111160, gene-QOZ80_2AG0111190, gene-QOZ80_2AG0111200, gene-QOZ80_2AG0111220, gene-QOZ80_2AG0111230, gene-QOZ80_2BG0164470, gene-QOZ80_2BG0164480, gene-QOZ80_2BG0164570, gene-QOZ80_2BG0164660, gene-QOZ80_2BG0164720, gene-QOZ80_2BG0164730, gene-QOZ80_2BG0164740, gene-QOZ80_6AG0549200, gene-QOZ80_6BG0502750
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.3HG0267570.1.CDS1 ... HORVU.MOREX.r3.3HG0277250.1.CDS1, HORVU.MOREX.r3.4HG0336510.1.CDS1, HORVU.MOREX.r3.5HG0421140.1.CDS1, HORVU.MOREX.r3.5HG0421160.1.CDS1, HORVU.MOREX.r3.5HG0421170.1.CDS1, HORVU.MOREX.r3.5HG0421200.1.CDS1, HORVU.MOREX.r3.5HG0424770.1.CDS1, HORVU.MOREX.r3.5HG0424800.1.CDS1, HORVU.MOREX.r3.5HG0424810.1.CDS1
Poaceae	Lolium multiflorum	9	gene-QYE76_001037, gene-QYE76_018248, gene-QYE76_038921 ... gene-QYE76_040249, gene-QYE76_054338, gene-QYE76_054447, gene-QYE76_054448, gene-QYE76_060452, gene-QYE76_060453
Poaceae	Oryza coarctata	37	Oco01G011490, Oco01G013360, Oco01G013370, Oco01G016350 ... Oco01G016960, Oco01G021620, Oco02G013520, Oco02G017180, Oco02G022200, Oco02G022220, Oco03G008820, Oco04G009130, Oco04G009140, Oco04G009150, Oco04G009160, Oco08G003970, Oco09G012500, Oco09G015350, Oco09G015370, Oco09G015380, Oco09G017150, Oco09G017170, Oco09G017220, Oco09G017230, Oco09G017240, Oco09G017250, Oco09G017510, Oco10G012580, Oco10G012590, Oco10G015260, Oco10G015270, Oco10G017360, Oco13G002050, Oco14G002140, Oco22G008680, Oco23G005470, Oco24G005120
Poaceae	Oryza sativa	39	LOC_Os01g19280.1, LOC_Os01g33650.1, LOC_Os01g40240.1 ... LOC_Os01g47130.1, LOC_Os01g48250.1, LOC_Os01g56710.1, LOC_Os01g56740.1, LOC_Os01g56750.1, LOC_Os02g21220.1, LOC_Os02g21230.1, LOC_Os02g21310.1, LOC_Os02g54330.1, LOC_Os05g40430.1, LOC_Os05g40450.1, LOC_Os05g40500.1, LOC_Os05g40510.1, LOC_Os05g40520.1, LOC_Os05g40550.1, LOC_Os05g40570.1, LOC_Os05g40580.1, LOC_Os05g40590.1, LOC_Os05g40610.1, LOC_Os05g40620.1, LOC_Os05g46050.1, LOC_Os05g46060.1, LOC_Os05g46150.1, LOC_Os05g46160.1, LOC_Os05g46170.1, LOC_Os05g46180.1, LOC_Os05g46190.1, LOC_Os05g49490.1, LOC_Os05g49500.1, LOC_Os05g49510.1, LOC_Os05g50020.1, LOC_Os08g27690.1, LOC_Os12g23450.1, LOC_Os12g23460.1, LOC_Os12g23514.1, LOC_Os12g23670.1
Poaceae	Paspalum vaginatum	15	gene-BS78_01G196100, gene-BS78_02G166400, gene-BS78_K112000 ... gene-BS78_03G175100, gene-BS78_03G219400, gene-BS78_04G168500, gene-BS78_05G118300, gene-BS78_05G120500, gene-BS78_05G120800, gene-BS78_06G116900, gene-BS78_09G133600, gene-BS78_09G172800, gene-BS78_09G243800, gene-BS78_09G243900, gene-BS78_K156300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0301124, Pt_Chr0303031, Pt_Chr0304668
Poaceae	Sporobolus alterniflorus	11	Chr02G016890, Chr03G009760, Chr05G017090, Chr05G017100 ... Chr05G017110, Chr05G017120, Chr09G001230, Chr09G001310, Chr09G001320, Chr09G001330, Chr18G008730
Poaceae	Thinopyrum elongatum	5	Tel1E01G479100, Tel3E01G364200, Tel3E01G406700 ... Tel5E01G030600, Tel5E01G031100
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG035780, gene_TRIDC3BG040150
Poaceae	Triticum aestivum	30	TraesCS1A02G103400.1.cds1, TraesCS1A02G103700.1.cds1 ... TraesCS1A02G103800.1.cds1, TraesCS1B02G305300.2, TraesCS1D02G295700.1, TraesCS2D02G218900.1.cds1, TraesCS3A02G209600.1.cds1, TraesCS3A02G239400.1.cds1, TraesCS3B02G239600.1.cds1, TraesCS3B02G268000.1.cds1, TraesCS3D02G212500.1.cds1, TraesCS3D02G239700.1.cds1, TraesCS4D02G039800.1.cds1, TraesCS5A02G013800.1.cds1, TraesCS5A02G014000.1.cds1, TraesCS5A02G381900.1, TraesCS5B02G011500.1.cds1, TraesCS5B02G011600.1.cds1, TraesCS5B02G011900.1.cds1, TraesCS5B02G012700.1, TraesCS5B02G012800.1.cds1, TraesCS5B02G385100.1.cds1, TraesCS5D02G019000.1, TraesCS5D02G019200.1, TraesCS5D02G019300.1, TraesCS5D02G019500.1.cds1, TraesCS6A02G276500.1.cds1, TraesCS6B02G194800.1.cds1, TraesCS6D02G156000.1.cds1, TraesCSU02G210700.1
Poaceae	Zea mays	10	Zm00001eb167860_P001, Zm00001eb167880_P001 ... Zm00001eb167900_P001, Zm00001eb236630_P001, Zm00001eb290000_P001, Zm00001eb290010_P001, Zm00001eb290020_P001, Zm00001eb290060_P001, Zm00001eb290070_P001, Zm00001eb290090_P001
Poaceae	Zoysia japonica	4	nbis-gene-29398, nbis-gene-34023, nbis-gene-34025 ... nbis-gene-45262
Poaceae	Zoysia macrostachya	2	Zma_g15275, Zma_g8125