Basic Information
Locus ID:
gene-BS78_05G118200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein of unknown function (DUF 659)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 16347706 | 16349582 | - | gene-BS78_05G118200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 64,772.92 Da | 35.29 | 68.48 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 3 | 40 | 7.7E-5 | IPR003656 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 249 | 400 | 7.1E-48 | IPR007021 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 271 | 566 | 9.86E-30 | IPR012337 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 1 | 54 | 9.784496 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 156 | - | - |
| Coils | Coil | Coil | 256 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13020.1 | hAT transposon superfamily protein. | 0 |
| RefSeq | XP_039780798.1 | uncharacterized protein LOC120648106 [Panicum virgatum] | 0 |
| TrEMBL | Q60D97 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=B1007D10.5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |