Basic Information
Locus ID:
gene-BS78_05G111600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 14672923 | 14673384 | + | gene-BS78_05G111600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 16,126.51 Da | 40.25 | 90.65 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 94 | 138 | 3.8E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 143 | 5.42E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 145 | 2.9E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 138 | 9.774726 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002450137.1 | E3 ubiquitin-protein ligase Os03g0188200 [Sorghum bicolor] | 0 |
| TrEMBL | A0A811QHK8 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS42153 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0672420 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003646, gene-QYE76_003649 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02210.1 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_05G012200, gene-BS78_05G012500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb195250_P001 |