halophFGD

Basic Information

Locus ID: gene-BS78_05G102700

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: RNA recognition motif

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	12906145	12907362	+	gene-BS78_05G102700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.54	45,195.84 Da	47.57	77.09	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	8	40	4.0E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	5	41	3.27E-6	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	8	44	2.1E-5	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_034569764.1	uncharacterized protein LOC117834253 [Setaria viridis]	0
TrEMBL	A0A1E5VW93	DUF295 domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009611 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	23	AH01.3923, AH03.1073, AH03.1075, AH04.664, AH04.667 ... AH04.673, AH05.433, AH08.2195, BH01.1079, BH01.4257, BH01.4266, BH03.1240, BH04.703, BH05.487, CH01.4555, CH03.1375, CH04.706, CH04.707, CH04.715, CH05.554, CH05.555, CH05.556, Contig1604.2
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_6AG0525670, gene-QOZ80_6AG0525690 ... gene-QOZ80_6BG0479360, gene-QOZ80_8BG0667130, gene-QOZ80_8BG0667150, gene-QOZ80_9AG0676410, gene-QOZ80_9AG0676960, gene-QOZ80_9BG0700250, gene-QOZ80_9BG0700280, gene-QOZ80_9BG0700680, gene-QOZ80_9BG0700710
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0085110.1, HORVU.MOREX.r3.3HG0321190.1 ... HORVU.MOREX.r3.3HG0328390.1.CDS1, HORVU.MOREX.r3.3HG0328450.1, HORVU.MOREX.r3.5HG0507210.1.CDS1
Poaceae	Lolium multiflorum	15	gene-QYE76_000985, gene-QYE76_006996, gene-QYE76_007069 ... gene-QYE76_041449, gene-QYE76_041477, gene-QYE76_044950, gene-QYE76_045255, gene-QYE76_056700, gene-QYE76_058336, gene-QYE76_058454, gene-QYE76_058766, gene-QYE76_059072, gene-QYE76_059073, gene-QYE76_059076, gene-QYE76_059078
Poaceae	Oryza coarctata	4	Oco04G007650, Oco15G009840, Oco15G009850, Oco18G011940
Poaceae	Oryza sativa	5	LOC_Os02g16740.1, LOC_Os02g16760.1, LOC_Os02g16770.1 ... LOC_Os09g39050.1, LOC_Os09g39190.1
Poaceae	Paspalum vaginatum	10	gene-BS78_03G190000, gene-BS78_03G190200, gene-BS78_K233200 ... gene-BS78_05G100500, gene-BS78_05G102600, gene-BS78_05G102700, gene-BS78_05G107600, gene-BS78_K233300, gene-BS78_K241800, gene-BS78_K242000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0600882, Pt_Chr0601124, Pt_Chr0700603, Pt_Chr0700604
Poaceae	Sporobolus alterniflorus	2	Chr07G019720, Chr10G005970
Poaceae	Thinopyrum elongatum	6	Tel2E01G813100, Tel3E01G890600, Tel3E01G891300 ... Tel5E01G587900, Tel6E01G049100, Tel6E01G631000
Poaceae	Triticum dicoccoides	14	gene_TRIDC3AG074560, gene_TRIDC3AG074600 ... gene_TRIDC3AG074640, gene_TRIDC3BG060290, gene_TRIDC3BG084130, gene_TRIDC3BG085890, gene_TRIDC5AG052470, gene_TRIDC5BG057870, gene_TRIDC5BG057930, gene_TRIDC5BG067420, gene_TRIDC5BG067460, gene_TRIDC6AG059260, gene_TRIDC6BG002100, gene_TRIDC7BG076510
Poaceae	Triticum aestivum	25	TraesCS2A02G006600.1.cds1, TraesCS2B02G506800.1.cds1 ... TraesCS2B02G506900.1, TraesCS2D02G009300.1.cds1, TraesCS3B02G594900.1, TraesCS3B02G595000.1.cds1, TraesCS3B02G596100.1, TraesCS3D02G532200.1.cds1, TraesCS3D02G545400.1.cds1, TraesCS5A02G358800.1, TraesCS5B02G369700.1.cds1, TraesCS5B02G371000.1, TraesCS5D02G367800.1, TraesCS5D02G367900.1, TraesCS5D02G377500.1.cds1, TraesCS5D02G445700.1, TraesCS6A02G012200.1, TraesCS6B02G018600.1, TraesCS7A02G562200.1.cds1, TraesCS7B02G500500.1.cds1, TraesCS7D02G512300.1.cds1, TraesCS7D02G512400.1.cds1, TraesCSU02G055500.1, TraesCSU02G218400.1, TraesCSU02G221200.1
Poaceae	Zoysia japonica	4	nbis-gene-27273, nbis-gene-41884, nbis-gene-49136 ... nbis-gene-54856
Poaceae	Zoysia macrostachya	3	Zma_g18560, Zma_g19347, Zma_g8005
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g32710
Tamaricaceae	Tamarix chinensis	1	TC12G1151