Basic Information
Locus ID:
gene-BS78_05G094500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11249463 | 11252729 | + | gene-BS78_05G094500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 99,917.14 Da | 62.77 | 61.97 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 533 | 565 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 607 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 459 | 4.8E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 420 | 783 | 4.73E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 411 | 788 | 1.1E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 661 | 701 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 739 | 780 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 565 | 5.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 607 | 2.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 459 | 1.5E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 534 | 568 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 534 | 574 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 427 | 460 | 13.975578 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 574 | 608 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 468 | 17.325764 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 574 | 608 | 11.377324 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 552 | 566 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 446 | 460 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 594 | 608 | 6.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 552 | 566 | 6.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 446 | 460 | 6.3E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 508 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008679648.1 | uncharacterized protein LOC103654584 isoform X1 [Zea mays] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q855 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS38010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology