Basic Information
Locus ID:
gene-BS78_05G092100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10972433 | 10973920 | + | gene-BS78_05G092100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 45,930.64 Da | 42.65 | 80.69 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 108 | 207 | 2.58146E-15 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 233 | 350 | 8.2E-23 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 108 | 209 | 1.06E-14 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 220 | 351 | 1.35E-27 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 88 | 209 | 2.8E-14 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 352 | 417 | 3.9E-16 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 217 | 347 | 1.0E-33 | IPR011333 |
| SMART | SM00225 | BTB_4 | 243 | 352 | 6.3E-20 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 241 | 315 | 17.313879 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_034606551.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q836 | BTB domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS37026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0321680, gene-QOZ80_4AG0321870 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G227200, gene-BS78_05G092100 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G013180 |
| Poaceae | Zea mays | 1 | Zm00001eb166870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7962 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21111 |