Basic Information
Locus ID:
gene-BS78_05G089700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10622375 | 10623847 | + | gene-BS78_05G089700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 39,440.63 Da | 24.66 | 87.24 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 211 | 365 | 5.28939E-77 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 186 | 2.66992E-59 | - |
| Pfam | PF00190 | Cupin | 17 | 167 | 1.8E-26 | IPR006045 |
| Pfam | PF00190 | Cupin | 209 | 351 | 9.1E-22 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 356 | 5.33E-49 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 209 | 370 | 1.7E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 208 | 3.0E-29 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 208 | 352 | 2.8E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 13 | 170 | 3.0E-29 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 329 | 346 | 1.6E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 224 | 244 | 1.6E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 307 | 325 | 1.6E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 271 | 287 | 1.6E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 289 | 304 | 1.6E-12 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6TGM6 | 11S seed storage protein OS=Setaria viridis OX=4556 GN=SEVIR_8G061100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology