Basic Information
Locus ID:
gene-BS78_05G077900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8933161 | 8945319 | - | gene-BS78_05G077900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 40,174.86 Da | 46.44 | 91.65 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 173 | 297 | 2.3E-15 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 52 | 161 | 1.6E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 304 | 4.71E-48 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 19 | 122 | 2.4E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 171 | 325 | 1.4E-26 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 52 | 304 | 18.831448 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 58 | 81 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65790.1 | receptor kinase 1. An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. | 0 |
| RefSeq | XP_021317102.1 | uncharacterized protein LOC8079731 isoform X2 [Sorghum bicolor] | 0 |
| Q39086 | Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana OX=3702 GN=SD17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0P7S1 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG068903 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH04.534 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670760, gene-QOZ80_9AG0675630 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0495000.1, HORVU.MOREX.r3.5HG0495010.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_026497, gene-QYE76_036873, gene-QYE76_036877 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G077900, gene-BS78_05G087600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401770, Pt_Chr0505685 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr31G007950 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G468300, Tel6E01G025100, Tel7E01G888400 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG047840, gene_TRIDC5BG047850 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS3A02G094800.1, TraesCS3D02G095000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb201450_P002 |