Basic Information
Locus ID:
gene-BS78_05G069800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Mitochondrial protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7611369 | 7642049 | + | gene-BS78_05G069800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 149,113.53 Da | 38.12 | 79.55 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 1127 | 1149 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 647 | 687 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 642 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 548 | 0.023 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 41 | 307 | 6.7E-48 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 992 | 1031 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1082 | 1121 | 5.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 733 | 770 | 0.063 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 357 | 465 | 1.86E-7 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 517 | 809 | 4.0E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1004 | 1220 | 3.11E-29 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 310 | 9.44E-70 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 131 | 361 | 2.6E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 20 | 113 | 8.2E-25 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1000 | 1232 | 2.9E-46 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 362 | 488 | 1.9E-11 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 812 | 1.8E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1080 | 1121 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1125 | 1165 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 550 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 731 | 770 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 687 | 1.6E-4 | IPR001680 |
| SMART | SM00220 | serkin_6 | 40 | 318 | 2.6E-45 | IPR000719 |
| SMART | SM00320 | WD40_4 | 996 | 1031 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 642 | 0.0035 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 40 | 320 | 38.661449 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 738 | 779 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 653 | 696 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 738 | 770 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1132 | 1174 | 9.873505 | IPR001680 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 46 | 68 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 171 | 183 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1229 | 1260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1231 | 1256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 354 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21400.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 28. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_034607114.1 | probable serine/threonine-protein kinase PkwA isoform X2 [Setaria viridis] | 0 |
| O65405 | Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN=CRK28 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0A9VGH4 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology