Basic Information
Locus ID:
gene-BS78_05G057900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5825010 | 5834321 | - | gene-BS78_05G057900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 90,186.10 Da | 38.95 | 86.00 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 37 | 301 | 4.1E-48 | IPR000719 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 490 | 778 | 3.66E-26 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 26 | 332 | 1.91E-71 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3 | 110 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 129 | 316 | 1.6E-51 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 486 | 781 | 7.1E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 470 | 517 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 567 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 611 | 0.0048 | IPR001680 |
| SMART | SM00220 | serkin_6 | 37 | 303 | 4.4E-41 | IPR000719 |
| SMART | SM00320 | WD40_4 | 615 | 652 | 16.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 326 | 37.488327 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 65 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11460.2 | - | 0 |
| RefSeq | XP_034607114.1 | probable serine/threonine-protein kinase PkwA isoform X2 [Setaria viridis] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9VGH4 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology