halophFGD

Basic Information

Locus ID: gene-BS78_05G047400

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	4518607	4521598	+	gene-BS78_05G047400

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	88,880.35 Da	31.03	97.00	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	654	696	1.9E-8	IPR002885
Pfam	PF12854	PPR repeat	157	188	9.1E-12	IPR002885
Pfam	PF12854	PPR repeat	475	506	1.0E-5	IPR002885
Pfam	PF12854	PPR repeat	87	109	1.7E-6	IPR002885
Pfam	PF13041	PPR repeat family	373	422	4.1E-12	IPR002885
Pfam	PF13041	PPR repeat family	268	317	3.8E-14	IPR002885
Pfam	PF01535	PPR repeat	342	371	0.21	IPR002885
Pfam	PF13041	PPR repeat family	198	247	2.0E-16	IPR002885
Pfam	PF13041	PPR repeat family	548	594	3.1E-13	IPR002885
Pfam	PF12854	PPR repeat	617	644	3.2E-6	IPR002885
Pfam	PF12854	PPR repeat	510	542	6.0E-14	IPR002885
SUPERFAMILY	SSF81901	HCP-like	278	613	1.54E-5	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	147	247	3.5E-29	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	363	434	3.0E-20	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	565	682	1.2E-33	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	683	784	3.3E-13	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	17	146	5.0E-10	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	435	564	4.1E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	249	362	2.9E-33	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	342	374	3.7E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	128	161	2.0E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	586	619	5.0E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	272	305	3.4E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	92	124	2.8E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	376	410	4.5E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	201	235	2.1E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	691	725	5.9E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	163	192	2.1E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	306	338	3.5E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	413	445	5.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	447	480	2.8E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	551	585	9.3E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	657	690	3.2E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	516	550	6.0E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	621	654	1.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	483	515	3.1E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	236	270	1.2E-10	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	619	653	10.522905	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	409	443	11.805378	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	654	688	11.509422	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	444	478	11.662881	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	514	548	12.912469	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	269	303	12.145178	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	199	233	10.150222	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	125	160	9.722731	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	374	408	12.649398	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	234	268	13.08785	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	689	723	10.13926	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	549	583	12.83574	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	584	618	11.816339	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	90	124	9.722731	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	339	373	9.010246	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	479	513	10.413293	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	304	338	12.298636	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	161	195	11.947875	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17964 (leucine-rich PPR motif-containing protein, mitochondrial)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_039823118.1	protein Rf1, mitochondrial-like [Panicum virgatum]
Swiss-Prot	Q76C99	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1
TrEMBL	A0A8T0PAA0	Pentatricopeptide repeat-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG033400 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4AG0007790
Arecaceae	Cocos nucifera	1	scaffold010752G000010
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1150.V1.1
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ... gene.Cymno15g00330
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ... gene.Thate08g21140, gene.Thate09g04990
Poaceae	Echinochloa crus-galli	20	AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ... BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ... gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae	Hordeum vulgare	21	HORVU.MOREX.r3.1HG0005110.1.CDS1 ... HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae	Lolium multiflorum	45	gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ... gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae	Oryza coarctata	12	Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ... Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae	Oryza sativa	14	LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ... LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae	Paspalum vaginatum	17	gene-BS78_01G189400, gene-BS78_05G011700 ... gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500284, Pt_Chr0500285
Poaceae	Sporobolus alterniflorus	22	Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ... Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae	Thinopyrum elongatum	20	Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ... Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae	Triticum dicoccoides	49	gene_TRIDC1AG003330, gene_TRIDC1AG003340 ... gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae	Triticum aestivum	126	TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ... TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae	Zea mays	9	Zm00001eb065260_P001, Zm00001eb114490_P001 ... Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae	Zoysia japonica	5	nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ... nbis-gene-7954, nbis-gene-7966
Poaceae	Zoysia macrostachya	7	Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ... Zma_g19498, Zma_g21114
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ... gene.Posoc07g00950
Salicaceae	Populus euphratica	1	populus_peu19919
Zosteraceae	Zostera marina	4	Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ... Zosma06g26890.v3.1