halophFGD

Basic Information

Locus ID: gene-BS78_05G046500

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: source UniProtKB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	4436514	4441370	-	gene-BS78_05G046500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.76	89,092.10 Da	32.35	91.75	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	479	525	2.2E-12	IPR002885
Pfam	PF13041	PPR repeat family	199	248	2.3E-17	IPR002885
Pfam	PF01535	PPR repeat	93	118	0.083	IPR002885
Pfam	PF13041	PPR repeat family	621	667	7.9E-15	IPR002885
Pfam	PF12854	PPR repeat	158	189	3.5E-9	IPR002885
Pfam	PF13041	PPR repeat family	374	423	7.3E-13	IPR002885
Pfam	PF13041	PPR repeat family	549	596	7.9E-13	IPR002885
Pfam	PF01535	PPR repeat	692	722	0.1	IPR002885
Pfam	PF13041	PPR repeat family	304	352	4.6E-17	IPR002885
Pfam	PF12854	PPR repeat	441	472	2.9E-6	IPR002885
Pfam	PF12854	PPR repeat	265	297	6.3E-7	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	648	716	3.7E-14	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	368	435	3.3E-20	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	151	253	2.6E-30	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	579	647	9.4E-18	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	436	507	1.7E-16	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	508	578	4.2E-21	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	717	787	7.7E-6	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	254	367	1.1E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	11	150	1.0E-13	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	130	163	2.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	93	126	9.1E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	412	446	4.7E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	692	726	2.0E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	273	306	3.5E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	484	516	3.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	202	236	1.8E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	237	271	3.1E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	552	585	1.2E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	343	375	0.0017	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	447	481	5.8E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	587	618	4.3E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	378	411	3.5E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	164	193	1.5E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	622	656	1.4E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	657	690	1.5E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	307	341	4.6E-11	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	517	551	2.6E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	340	374	10.172144	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	91	125	9.284279	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	550	584	13.701682	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	515	549	11.91499	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	235	269	12.463056	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	126	161	10.029647	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	305	339	14.249747	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	162	196	11.301158	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	480	514	11.377887	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	200	234	12.857662	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	445	479	12.013642	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	620	654	12.320559	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	690	724	9.591195	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	410	444	12.320559	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	585	619	10.040608	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	270	304	12.868624	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	375	409	12.386327	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	655	689	10.818861	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17964 (leucine-rich PPR motif-containing protein, mitochondrial)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_025811147.1	protein Rf1, mitochondrial-like [Panicum hallii]
Swiss-Prot	Q76C99	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1
TrEMBL	A0A2S3HH00	PPR_long domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G043000 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4AG0007790
Arecaceae	Cocos nucifera	1	scaffold010752G000010
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1150.V1.1
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ... gene.Cymno15g00330
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ... gene.Thate08g21140, gene.Thate09g04990
Poaceae	Echinochloa crus-galli	20	AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ... BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ... gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae	Hordeum vulgare	21	HORVU.MOREX.r3.1HG0005110.1.CDS1 ... HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae	Lolium multiflorum	45	gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ... gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae	Oryza coarctata	12	Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ... Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae	Oryza sativa	14	LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ... LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae	Paspalum vaginatum	17	gene-BS78_01G189400, gene-BS78_05G011700 ... gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500284, Pt_Chr0500285
Poaceae	Sporobolus alterniflorus	22	Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ... Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae	Thinopyrum elongatum	20	Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ... Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae	Triticum dicoccoides	49	gene_TRIDC1AG003330, gene_TRIDC1AG003340 ... gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae	Triticum aestivum	126	TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ... TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae	Zea mays	9	Zm00001eb065260_P001, Zm00001eb114490_P001 ... Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae	Zoysia japonica	5	nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ... nbis-gene-7954, nbis-gene-7966
Poaceae	Zoysia macrostachya	7	Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ... Zma_g19498, Zma_g21114
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ... gene.Posoc07g00950
Salicaceae	Populus euphratica	1	populus_peu19919
Zosteraceae	Zostera marina	4	Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ... Zosma06g26890.v3.1