Basic Information
Locus ID:
gene-BS78_05G039800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3613786 | 3617122 | - | gene-BS78_05G039800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 81,754.64 Da | 47.62 | 81.71 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 471 | 733 | 2.92738E-86 | - |
| CDD | cd00054 | EGF_CA | 349 | 392 | 1.19392E-6 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 466 | 733 | 1.5E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 466 | 735 | 2.56E-67 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 346 | 399 | 5.86E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 448 | 540 | 3.5E-22 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 309 | 399 | 9.1E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 541 | 742 | 4.8E-51 | - |
| SMART | SM00220 | serkin_6 | 465 | 735 | 9.0E-29 | IPR000719 |
| SMART | SM00181 | egf_5 | 298 | 348 | 50.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 349 | 399 | 8.7E-9 | IPR001881 |
| SMART | SM00181 | egf_5 | 352 | 399 | 0.0015 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 465 | 742 | 36.343475 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 471 | 492 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 585 | 597 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 374 | 385 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 349 | 383 | - | IPR018097 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_039793966.1 | wall-associated receptor kinase 4-like [Panicum virgatum] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0V8Y9 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG610800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology