Basic Information
Locus ID:
gene-BS78_05G024300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase galacturonan-binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2284219 | 2289539 | - | gene-BS78_05G024300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 77,738.72 Da | 46.63 | 91.83 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 321 | 357 | 2.36545E-7 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 49 | 90 | 2.7E-7 | IPR025287 |
| Pfam | PF07645 | Calcium-binding EGF domain | 321 | 361 | 1.1E-6 | IPR001881 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 432 | 697 | 3.1E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 415 | 700 | 1.31E-66 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 319 | 366 | 2.43E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 506 | 706 | 4.3E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 413 | 505 | 1.1E-21 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 281 | 364 | 5.6E-10 | - |
| SMART | SM00179 | egfca_6 | 321 | 364 | 1.5E-8 | IPR001881 |
| SMART | SM00181 | egf_5 | 324 | 364 | 0.0019 | IPR000742 |
| SMART | SM00181 | egf_5 | 270 | 320 | 56.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 430 | 699 | 2.1E-27 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 321 | 364 | 11.67925 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 430 | 699 | 34.732197 | IPR000719 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 339 | 350 | - | IPR000152 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 436 | 458 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 550 | 562 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 321 | 348 | - | IPR018097 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_039793966.1 | wall-associated receptor kinase 4-like [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0V8Y9 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG610800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology