Basic Information
Locus ID:
gene-BS78_05G016000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ADP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1310177 | 1327391 | - | gene-BS78_05G016000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 166,922.56 Da | 51.07 | 99.28 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 362 | 500 | 6.31238E-5 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 832 | 848 | 0.69 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 934 | 954 | 0.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 19 | 302 | 6.2E-49 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 366 | 580 | 8.6E-35 | IPR002182 |
| Pfam | PF13855 | Leucine rich repeat | 761 | 818 | 6.1E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 309 | 2.19E-68 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 352 | 586 | 2.38E-46 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1247 | 1434 | 8.24E-26 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 698 | 972 | 3.77E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 900 | 1199 | 1.29E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 111 | 330 | 5.8E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 88 | 5.4E-23 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 352 | 510 | 1.6E-29 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 643 | 776 | 5.1E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1342 | 1448 | 1.2E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 997 | 1201 | 1.0E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 777 | 986 | 9.2E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1236 | 1341 | 2.3E-8 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 806 | 826 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 830 | 857 | 6.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 932 | 959 | 120.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 1303 | 1327 | 81.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 18 | 302 | 1.5E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 760 | 783 | 0.96 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 932 | 956 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 714 | 737 | 2.1 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 311 | 37.361122 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 46 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 156 | 168 | - | IPR008271 |
| PRINTS | PR00364 | Disease resistance protein signature | 456 | 470 | 4.9E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 553 | 567 | 4.9E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 930 | 946 | 4.9E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 385 | 400 | 4.9E-20 | - |
| Coils | Coil | Coil | 1015 | 1044 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38830.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 26. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_039776652.1 | disease resistance protein RGA2-like isoform X1 [Panicum virgatum] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0P7R9 | Protein kinase domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_8NG221700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology