Basic Information
Locus ID:
gene-BS78_05G012500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1080395 | 1080790 | - | gene-BS78_05G012500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 14,277.32 Da | 42.39 | 93.13 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 75 | 120 | 3.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 125 | 4.04E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 125 | 8.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 119 | 2.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 120 | 11.486073 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039840466.1 | RING finger protein 215-like [Panicum virgatum] | 0 |
| TrEMBL | A0A3L6PLQ3 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G03570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0672420 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003646, gene-QYE76_003649 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02210.1 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_05G012200, gene-BS78_05G012500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb195250_P001 |