Basic Information
Locus ID:
gene-BS78_05G012200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1055244 | 1055684 | - | gene-BS78_05G012200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 15,450.72 Da | 58.68 | 94.38 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 89 | 134 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 139 | 8.39E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 140 | 1.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 133 | 7.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 134 | 12.54829 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039840466.1 | RING finger protein 215-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0PBL1 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG004800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0672420 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003646, gene-QYE76_003649 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02210.1 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_05G012200, gene-BS78_05G012500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb195250_P001 |