halophFGD

Basic Information

Locus ID: gene-BS78_05G008100

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: Ribosome inactivating protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	759731	760246	+	gene-BS78_05G008100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.39	19,277.72 Da	58.80	79.30	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00161	Ribosome inactivating protein	16	144	1.6E-23	IPR001574
SUPERFAMILY	SSF56371	Ribosome inactivating proteins (RIP)	16	141	7.34E-20	IPR036041
Gene3D	G3DSA:3.40.420.10	Ricin (A subunit), domain 1	9	169	1.4E-29	IPR016138

Gene Ontology

Biological Process:

GO:0017148 (negative regulation of translation)

Molecular Function:

GO:0030598 (rRNA N-glycosylase activity)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_025877165.1	60 kDa jasmonate-induced protein-like [Oryza sativa Japonica Group]
Swiss-Prot	P25891	Ribosome-inactivating protein 3 OS=Zea mays OX=4577 GN=CRIP3 PE=1 SV=1
TrEMBL	A0A0A9EMA5	rRNA N-glycosylase OS=Arundo donax OX=35708 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5285
Arecaceae	Cocos nucifera	2	COCNU_08G005590, contig69358227G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103696813, gene-LOC120104334
Plumbaginaceae	Limonium bicolor	5	Lb2G11260, Lb3G18653, Lb4G25712, Lb6G29913, Lb6G30260
Poaceae	Echinochloa crus-galli	7	AH05.2679, AH09.116, BH02.2643, BH04.679, BH04.682 ... BH05.2772, CH02.3888
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0010670, gene-QOZ80_1AG0010680 ... gene-QOZ80_1BG0059180, gene-QOZ80_1BG0059190, gene-QOZ80_1BG0059200, gene-QOZ80_5AG0375470, gene-QOZ80_5AG0404620, gene-QOZ80_7AG0559480, gene-QOZ80_7BG0590780, gene-QOZ80_9BG0699670
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0059440.1.CDS1 ... HORVU.MOREX.r3.4HG0349720.1.CDS1, HORVU.MOREX.r3.5HG0520010.1.CDS1, HORVU.MOREX.r3.5HG0525770.1.CDS1, HORVU.MOREX.r3.5HG0525790.1.CDS1, HORVU.MOREX.r3.7HG0685280.1.CDS1, HORVU.MOREX.r3.7HG0731900.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_017620, gene-QYE76_018881, gene-QYE76_020496 ... gene-QYE76_027015, gene-QYE76_035671, gene-QYE76_059141
Poaceae	Oryza coarctata	5	Oco01G002570, Oco02G002460, Oco02G002620, Oco13G004140 ... Oco14G004790
Poaceae	Oryza sativa	4	LOC_Os01g06740.1, LOC_Os07g09070.1, LOC_Os11g06490.1 ... LOC_Os11g06630.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G008100, gene-BS78_06G018300, gene-BS78_K036200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300096, Pt_Chr0300140, Pt_Chr0307128, Pt_Chr0604834 ... Pt_Chr0702485
Poaceae	Sporobolus alterniflorus	3	Chr09G008370, Chr23G018840, Chr26G000910
Poaceae	Thinopyrum elongatum	3	Tel1E01G016500, Tel5E01G754000, Tel6E01G047400
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG035240, gene_TRIDC5AG067880 ... gene_TRIDC5AG067930, gene_TRIDC5BG073200, gene_TRIDC5BG073240, gene_TRIDC5BG073250, gene_TRIDC7AG062160
Poaceae	Triticum aestivum	19	TraesCS1A02G234300.1.cds1, TraesCS1B02G249200.1 ... TraesCS1D02G237700.1.cds1, TraesCS5A02G474900.1, TraesCS5A02G475300.1.cds1, TraesCS5A02G475400.1.cds1, TraesCS5A02G475500.1, TraesCS5B02G488300.1, TraesCS5B02G488400.1.cds1, TraesCS5B02G488500.1.cds1, TraesCS5B02G488600.1, TraesCS5B02G488700.1.cds1, TraesCS5B02G488800.1.cds1, TraesCS5D02G487600.1.cds1, TraesCS5D02G487700.1.cds1, TraesCS6D02G014500.1.cds1, TraesCS7A02G448400.1, TraesCSU02G183200.1.cds1, TraesCSU02G183400.1.cds1
Poaceae	Zea mays	4	Zm00001eb089930_P001, Zm00001eb092600_P002 ... Zm00001eb326540_P001, Zm00001eb350070_P001
Poaceae	Zoysia japonica	5	nbis-gene-35947, nbis-gene-48487, nbis-gene-51497 ... nbis-gene-52906, nbis-gene-6893
Poaceae	Zoysia macrostachya	2	Zma_g10001, Zma_g26746
Salicaceae	Populus euphratica	2	populus_peu15557, populus_peu15561
Tamaricaceae	Reaumuria soongarica	2	STRG.25961_chr11_-, STRG.26439_chr11_+
Tamaricaceae	Tamarix chinensis	6	TC10G1896, TC10G1897, TC10G1898, TC10G1900, TC10G1903 ... TC10G1904