Basic Information
Locus ID:
gene-BS78_05G005400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain of unknown function DUF223
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 583028 | 586802 | - | gene-BS78_05G005400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 89,192.73 Da | 43.57 | 74.60 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04481 | RPA1_DBD_B_like | 124 | 229 | 4.2537E-9 | - |
| CDD | cd04480 | RPA1_DBD_A_like | 18 | 103 | 8.6026E-24 | - |
| CDD | cd04476 | RPA1_DBD_C | 259 | 417 | 2.58602E-33 | IPR013955 |
| Pfam | PF16900 | Replication protein A OB domain | 121 | 213 | 2.0E-7 | IPR031657 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 41 | 106 | 8.9E-8 | IPR003871 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 277 | 395 | 2.5E-19 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 253 | 418 | 2.91E-32 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 3 | 109 | 7.88E-19 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 107 | 231 | 1.5E-14 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 2 | 101 | 3.8E-23 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 240 | 420 | 4.0E-34 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 102 | 234 | 7.2E-20 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 625 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_039789813.1 | replication protein A 70 kDa DNA-binding subunit B-like [Panicum virgatum] | 0 |
| F4JSG3 | Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0RAC5 | Replication protein A subunit OS=Panicum virgatum OX=38727 GN=PVAP13_6KG051005 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology