Basic Information
Locus ID:
gene-BS78_05G004500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBA1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 512792 | 518660 | - | gene-BS78_05G004500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 116,665.35 Da | 32.97 | 84.81 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01491 | Ube1_repeat1 | 46 | 431 | 8.06037E-155 | - |
| CDD | cd01490 | Ube1_repeat2 | 463 | 1002 | 0.0 | - |
| Pfam | PF00899 | ThiF family | 48 | 423 | 8.7E-29 | IPR000594 |
| Pfam | PF09358 | Ubiquitin fold domain | 955 | 1044 | 1.8E-25 | IPR018965 |
| Pfam | PF00899 | ThiF family | 444 | 944 | 2.2E-77 | IPR000594 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 221 | 291 | 1.2E-27 | IPR032418 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 293 | 362 | 2.1E-22 | IPR032420 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 631 | 884 | 1.2E-84 | IPR019572 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 41 | 428 | 1.27E-101 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 438 | 939 | 3.92E-130 | IPR035985 |
| Gene3D | G3DSA:3.40.50.720 | - | 464 | 942 | 3.4E-192 | - |
| Gene3D | G3DSA:3.40.50.12550 | - | 166 | 454 | 2.4E-111 | - |
| Gene3D | G3DSA:3.50.50.80 | - | 38 | 155 | 9.5E-37 | IPR042449 |
| Gene3D | G3DSA:2.40.30.180 | - | 209 | 290 | 2.4E-111 | IPR042302 |
| Gene3D | G3DSA:3.10.290.60 | - | 957 | 1047 | 2.1E-23 | IPR038252 |
| Gene3D | G3DSA:1.10.10.2660 | - | 616 | 891 | 3.4E-192 | IPR042063 |
| SMART | SM00985 | UBA_e1_C_a_2 | 922 | 1044 | 6.2E-53 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 41 | 1049 | 0.0 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 406 | 414 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 623 | 631 | - | IPR033127 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 183 | 210 | 2.0E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 692 | 719 | 2.0E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 538 | 563 | 2.0E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 491 | 514 | 2.0E-66 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 68 | 92 | 2.0E-66 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06460.1 | ubiquitin activating enzyme 2. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. | 0 |
| RefSeq | XP_002450102.1 | ubiquitin-activating enzyme E1 1 [Sorghum bicolor] | 0 |
| P20973 | Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum OX=4565 GN=UBA1 PE=1 SV=1 | 0 | |
| TrEMBL | C5Y2Z7 | E1 ubiquitin-activating enzyme OS=Sorghum bicolor OX=4558 GN=SORBI_3005G004400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology