Basic Information
Locus ID:
gene-BS78_04G328200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 45543242 | 45551985 | + | gene-BS78_04G328200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 129,302.59 Da | 56.32 | 61.35 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 919 | 1030 | 1.5E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 604 | 1074 | 5.63E-37 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 588 | 844 | 1.2E-90 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 873 | 1056 | 1.3E-69 | - |
| SMART | SM00558 | cupin_9 | 707 | 1047 | 9.1E-78 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 200 | 212 | 0.93 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 163 | 175 | 1.6 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 64 | 76 | 3.5 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 726 | 1047 | 27.472248 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 283 | 329 | 8.801028 | IPR001841 |
| PRINTS | PR00929 | AT-hook-like domain signature | 161 | 172 | 2.3E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 198 | 208 | 2.3E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 75 | 85 | 2.3E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 192 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_025799181.1 | lysine-specific demethylase JMJ25-like isoform X2 [Panicum hallii] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q0T4 | Lysine-specific demethylase JMJ25 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS32761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology