Basic Information
Locus ID:
gene-BS78_04G325100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 45374019 | 45380334 | + | gene-BS78_04G325100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 86,948.84 Da | 68.66 | 65.27 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 722 | 762 | 1.66351E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 720 | 767 | 1.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 722 | 768 | 5.89E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 709 | 773 | 7.9E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 723 | 762 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 149 | - | - |
| Coils | Coil | Coil | 476 | 496 | - | - |
| Coils | Coil | Coil | 87 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004954452.1 | uncharacterized protein LOC101769254 isoform X1 [Setaria italica] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WHK5 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G379000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology