Basic Information
Locus ID:
gene-BS78_04G316500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 44797174 | 44807261 | - | gene-BS78_04G316500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 87,201.41 Da | 44.79 | 67.52 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 521 | 798 | 1.51026E-61 | - |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 715 | 4.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 599 | 635 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 555 | 591 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 549 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 766 | 798 | 0.092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 511 | 798 | 1.36E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 652 | 798 | 1.6E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 651 | 9.5E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 595 | 635 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 759 | 798 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 591 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 677 | 715 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 674 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 757 | 0.58 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 684 | 724 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 766 | 798 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 766 | 798 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 644 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 559 | 591 | 9.99469 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 602 | 636 | 8.834696 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.871533 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 559 | 591 | 11.978851 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 428 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039791862.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0XC50 | LisH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG562000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology