Basic Information
Locus ID:
gene-BS78_04G288100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 41845657 | 41846998 | + | gene-BS78_04G288100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 33,569.50 Da | 71.86 | 54.75 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 190 | 232 | 5.055E-25 | - |
| Pfam | PF13639 | Ring finger domain | 190 | 232 | 2.5E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 2.8E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 236 | 2.65E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 238 | 3.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 191 | 231 | 5.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 232 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 136 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034575647.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7FCK0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G402300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology