Basic Information
Locus ID:
gene-BS78_04G271600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 40555911 | 40557745 | - | gene-BS78_04G271600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 48,365.20 Da | 55.38 | 99.80 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 46 | 87 | 9.13675E-21 | - |
| Pfam | PF04564 | U-box domain | 42 | 113 | 1.1E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 164 | 420 | 1.33E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 117 | 2.52E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 431 | 8.8E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 118 | 5.1E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 45 | 108 | 9.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 41 | 115 | 35.375721 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7FBR8 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G378400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology