Basic Information
Locus ID:
gene-BS78_04G266500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 40221506 | 40228882 | - | gene-BS78_04G266500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 36,135.12 Da | 40.76 | 60.44 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 47 | 185 | 3.9E-19 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 31 | 204 | 1.07E-35 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 55 | 208 | 4.5E-28 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 46 | 204 | 29.318941 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 256 | 276 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_039791333.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like [Panicum virgatum] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0X4L4 | NAC domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG406100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology