Basic Information
Locus ID:
gene-BS78_04G244600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38601669 | 38604947 | + | gene-BS78_04G244600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 51,816.49 Da | 51.21 | 73.30 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 163 | 446 | 4.92458E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 272 | 307 | 6.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 446 | 0.0012 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 191 | 248 | 4.6E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 361 | 0.0074 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 164 | 446 | 1.32E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 449 | 1.7E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 226 | 264 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 307 | 2.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 223 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 6.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 316 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 447 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 447 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 191 | 228 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 309 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 232 | 12.17936 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 294 | 308 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_025808881.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835F734 | ANAPC4_WD40 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_017721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology