Basic Information
Locus ID:
gene-BS78_04G240500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38151839 | 38159313 | - | gene-BS78_04G240500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 46,020.89 Da | 28.11 | 71.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 298 | 332 | 0.0046 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 105 | 126 | 1.0E-5 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 293 | 0.027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 172 | 7.7E-7 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 137 | 1.48E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 135 | 424 | 8.15E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 276 | 6.0E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 277 | 427 | 2.2E-26 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.094 | IPR000571 |
| SMART | SM00320 | WD40_4 | 256 | 293 | 0.0093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 210 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 420 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 249 | 4.7 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 101 | 128 | 8.0E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 337 | 380 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 333 | 9.3E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 302 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 101 | 129 | 14.877594 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.652499 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 172 | 11.391954 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 280 | 294 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 280 | 294 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 320 | 334 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.1E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | NP_001131242.1 | nucleic acid binding protein [Zea mays] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835FM84 | Zinc finger CCCH domain-containing protein 48 OS=Digitaria exilis OX=1010633 GN=HU200_008524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology