Basic Information
Locus ID:
gene-BS78_04G238300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 38027297 | 38031890 | - | gene-BS78_04G238300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 82,120.70 Da | 40.50 | 85.50 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 297 | 326 | 3.53194E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 486 | 735 | 8.3E-40 | IPR000719 |
| Pfam | PF01476 | LysM domain | 299 | 328 | 8.9E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 461 | 739 | 1.94E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 544 | 755 | 3.2E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 455 | 543 | 2.0E-13 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 296 | 342 | 1.0E-5 | IPR036779 |
| SMART | SM00257 | LysM_2 | 234 | 281 | 0.22 | IPR018392 |
| SMART | SM00220 | serkin_6 | 465 | 746 | 7.5E-25 | IPR000719 |
| SMART | SM00257 | LysM_2 | 298 | 342 | 0.3 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 436 | 746 | 33.276398 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 297 | 342 | 8.956945 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 589 | 601 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_021315473.1 | serine/threonine receptor-like kinase NFP [Sorghum bicolor] | 0 |
| Q0GXS4 | Serine/threonine receptor-like kinase NFP OS=Medicago truncatula OX=3880 GN=NFP PE=1 SV=1 | 0 | |
| TrEMBL | A0A194YT47 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3004G281300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12638, jg27829, jg30621 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6423 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah029151, Ah029152, Ah029153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166020 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg1092, Sbi_jg1096, Sbi_jg1097, Sbi_jg1100, Sbi_jg1101 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg3601, Seu_jg3602, Seu_jg3604, Seu_jg3605 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022882, GOSA_00022885 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl74255, Sgl74334, Sgl74335, Sgl77824 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006629, gene:ENSEOMG00000008352 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.7AG0011420, CQ.Regalona.r1.7AG0011430 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235780 |
| Apiaceae | Apium graveolens | 4 | Ag1G01816, Ag4G01026, Ag6G01493, Ag9G01739 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G000280, COCNU_07G007720 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699281, gene-LOC103702746, gene-LOC103723952 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2472.V1.1, AsparagusV1_08.1511.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G04152, Ftri17G21238, Ftri6G11221, FtriNA20598 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0375, Ceq09G0744 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl07G0386, Cgl07G0387, Cgl09G0806 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.913 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019995, Pov_00029367 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07902 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4457, AH07.3007, BH07.2832, CH01.5067, CH07.2912 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140990, gene-QOZ80_2BG0196610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0394920.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024435, gene-QYE76_068469, gene-QYE76_069786 |
| Poaceae | Oryza coarctata | 4 | Oco03G018260, Oco04G019010, Oco06G007610, Oco06G007620 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45750.1, LOC_Os03g13080.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G431400, gene-BS78_04G238300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203728 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G023440 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G409200, Tel6E01G481500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG009120, gene_TRIDC4BG041760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G061400.1.cds1, TraesCS4B02G236800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009380_P001, Zm00001eb187300_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22254, nbis-gene-4011 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16884, Zma_g4111 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.949, evm.TU.LG12.794 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17220 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.286, evm.TU.Scaffold_3_RagTag.375 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1548, nbisL1-mrna-1549, nbisL1-mrna-17166 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6967, nbisL1-mrna-7562 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-6018, nbisL1-mrna-6113 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000019l.413, add.evm.TU.utg000019l.445 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012766 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15563, nbisL1-mrna-19333, nbisL1-mrna-6402 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2292, nbisL1-mrna-3136, nbisL1-mrna-3139 |
| Salicaceae | Populus euphratica | 5 | populus_peu07461, populus_peu07462, populus_peu14290 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608981, gene-LOC132609067, gene-LOC132622935 |
| Solanaceae | Solanum chilense | 4 | SOLCI002407300, SOLCI002660500, SOLCI003953000 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107009582, gene-LOC107030506, gene-LOC107030507 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20256_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2121 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28740.v3.1 |