Basic Information
Locus ID:
gene-BS78_04G232500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 37564608 | 37566654 | + | gene-BS78_04G232500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 41,699.22 Da | 66.48 | 65.83 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 167 | 210 | 6.14845E-17 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 4.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 216 | 1.11E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 216 | 1.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 209 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 210 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 396 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039855698.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Panicum virgatum] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0XGZ8 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1KG440800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology