halophFGD

Basic Information

Locus ID: gene-BS78_04G231300

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	37468804	37471500	-	gene-BS78_04G231300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.04	58,223.33 Da	57.93	71.98	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01485	IBR domain, a half RING-finger domain	388	426	2.6E-7	IPR002867
Pfam	PF05773	RWD domain	53	169	1.1E-17	IPR006575
Pfam	PF01485	IBR domain, a half RING-finger domain	284	340	1.6E-8	IPR002867
SUPERFAMILY	SSF57850	RING/U-box	224	295	4.59E-11	-
SUPERFAMILY	SSF57850	RING/U-box	380	431	2.83E-13	-
SUPERFAMILY	SSF57850	RING/U-box	466	510	2.3E-5	-
SUPERFAMILY	SSF57850	RING/U-box	284	342	3.53E-7	-
SUPERFAMILY	SSF54495	UBC-like	49	170	7.69E-17	IPR016135
Gene3D	G3DSA:1.20.120.1750	-	361	463	1.4E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	214	296	1.4E-12	IPR013083
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	42	174	1.0E-21	IPR016135
SMART	SM00647	ibrneu5	283	340	4.2E-9	IPR002867
SMART	SM00591	RWD2001b	56	181	1.2E-8	IPR006575
SMART	SM00647	ibrneu5	376	438	1.7E-4	IPR002867
ProSiteProfiles	PS50908	RWD domain profile.	56	182	13.815426	IPR006575
ProSiteProfiles	PS51873	TRIAD supradomain profile.	208	442	22.969311	IPR044066
ProSitePatterns	PS00518	Zinc finger RING-type signature.	232	241	-	IPR017907

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11971 (E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G32340.1	NDR1/HIN1-like 8. Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
RefSeq	XP_039789898.1	E3 ubiquitin-protein ligase RNF14-like [Panicum virgatum]
TrEMBL	A0A8T0X317	RBR-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG436300 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg37360
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15035
Amaranthaceae	Atriplex hortensis	6	Ah004310, Ah004313, Ah004315, Ah004317, Ah004320, Ah004321
Amaranthaceae	Beta vulgaris	1	BVRB_5g106710
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15825, Sbi_jg24534, Sbi_jg56621, Sbi_jg8383
Amaranthaceae	Salicornia europaea	2	Seu_jg11664, Seu_jg13822
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010865, GOSA_00010866
Amaranthaceae	Suaeda glauca	7	Sgl22012, Sgl22013, Sgl22124, Sgl22125, Sgl27280, Sgl51287 ... Sgl56718
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005118, gene:ENSEOMG00000022460 ... gene:ENSEOMG00000024189
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.5BG0002260
Anacardiaceae	Pistacia vera	1	pistato.v30029780
Apiaceae	Apium graveolens	1	Ag8G01086
Arecaceae	Cocos nucifera	1	COCNU_07G003660
Arecaceae	Phoenix dactylifera	1	gene-LOC103714585
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.108.V1.1
Asteraceae	Flaveria trinervia	1	Ftri13G09830
Brassicaceae	Arabidopsis thaliana	1	AT1G32340.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007022m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g28560.v2.2
Brassicaceae	Brassica nigra	1	BniB03g035510.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G0292
Casuarinaceae	Casuarina glauca	2	Cgl01G0304, Cgl01G0308
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno18g05620
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g06980
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.823
Plantaginaceae	Plantago ovata	3	Pov_00003048, Pov_00003050, Pov_00003052
Plumbaginaceae	Limonium bicolor	1	Lb4G24266
Poaceae	Echinochloa crus-galli	11	AH07.3080, AH07.3081, AH09.2149, AH09.2150, BH07.2902 ... BH09.2315, BH09.2317, CH07.2982, CH07.2983, CH09.2456, CH09.2459
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0141730, gene-QOZ80_2BG0197310 ... gene-QOZ80_4AG0305490, gene-QOZ80_4AG0305500, gene-QOZ80_4AG0305510, gene-QOZ80_4AG0305530, gene-QOZ80_4AG0305540, gene-QOZ80_4BG0336480, gene-QOZ80_4BG0336490, gene-QOZ80_4BG0336500, gene-QOZ80_4BG0336520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0197380.1, HORVU.MOREX.r3.2HG0197430.1 ... HORVU.MOREX.r3.2HG0197440.1, HORVU.MOREX.r3.2HG0197510.1
Poaceae	Lolium multiflorum	17	gene-QYE76_008070, gene-QYE76_039445, gene-QYE76_039446 ... gene-QYE76_045966, gene-QYE76_045967, gene-QYE76_045971, gene-QYE76_045976, gene-QYE76_045977, gene-QYE76_045985, gene-QYE76_045986, gene-QYE76_045991, gene-QYE76_045992, gene-QYE76_045994, gene-QYE76_045997, gene-QYE76_045999, gene-QYE76_046001, gene-QYE76_061984
Poaceae	Oryza coarctata	7	Oco03G018740, Oco04G019470, Oco07G014620, Oco07G014630 ... Oco07G014650, Oco08G014090, Oco08G014110
Poaceae	Oryza sativa	7	LOC_Os02g46720.1, LOC_Os02g46730.1, LOC_Os02g46740.1 ... LOC_Os04g50720.1, LOC_Os04g50730.1, LOC_Os04g50740.1, LOC_Os04g50760.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G231300, gene-BS78_06G211200 ... gene-BS78_06G211400, gene-BS78_06G211500, gene-BS78_06G211600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0301531, Pt_Chr0301532, Pt_Chr0301534, Pt_Chr0301536 ... Pt_Chr0301554, Pt_Chr0301556, Pt_Chr0301557, Pt_Chr0301559, Pt_Chr0301560, Pt_Chr0304772, Pt_Chr0304773
Poaceae	Sporobolus alterniflorus	5	Chr15G006090, Chr25G004200, Chr25G004220, Chr30G004050 ... Chr30G004070
Poaceae	Thinopyrum elongatum	15	Tel1E01G107900, Tel1E01G229000, Tel2E01G755200 ... Tel2E01G755300, Tel2E01G755800, Tel2E01G755900, Tel2E01G756000, Tel2E01G756400, Tel2E01G756600, Tel2E01G756700, Tel2E01G756900, Tel2E01G757300, Tel2E01G757700, Tel2E01G841000, Tel5E01G022700
Poaceae	Triticum dicoccoides	14	gene_TRIDC2AG063830, gene_TRIDC2AG063840 ... gene_TRIDC2AG063850, gene_TRIDC2AG063870, gene_TRIDC2BG067950, gene_TRIDC2BG067960, gene_TRIDC2BG067970, gene_TRIDC2BG068000, gene_TRIDC2BG068010, gene_TRIDC2BG068020, gene_TRIDC2BG068030, gene_TRIDC2BG068070, gene_TRIDC2BG075660, gene_TRIDC5BG009240
Poaceae	Triticum aestivum	30	TraesCS1B02G065800.1, TraesCS1B02G476700.1 ... TraesCS1D02G051700.1, TraesCS1D02G450900.1, TraesCS2A02G445600.1, TraesCS2A02G445700.1, TraesCS2A02G445900.1, TraesCS2A02G446000.1, TraesCS2A02G446100.1, TraesCS2A02G446200.1, TraesCS2A02G446500.1, TraesCS2B02G466600.1, TraesCS2B02G466700.1, TraesCS2B02G466800.1, TraesCS2B02G466900.1, TraesCS2B02G467100.1, TraesCS2B02G467200.1, TraesCS2B02G467400.1, TraesCS2B02G524900.1, TraesCS2B02G525000.1, TraesCS2D02G444400.1, TraesCS2D02G444500.1, TraesCS2D02G444600.1, TraesCS2D02G444700.1, TraesCS2D02G444900.1, TraesCS2D02G445000.1, TraesCS2D02G445100.1, TraesCS2D02G445300.1, TraesCS2D02G445500.1, TraesCS5B02G055600.2
Poaceae	Zea mays	2	Zm00001eb072220_P001, Zm00001eb251320_P002
Poaceae	Zoysia macrostachya	1	Zma_g20351
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.694, evm.TU.LG17.706
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g00730, gene.Posoc07g00770
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.547
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17806
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-11632
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8199
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000007l.56
Rhizophoraceae	Kandelia obovata	1	Maker00018445
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16251
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-10564
Salicaceae	Populus euphratica	1	populus_peu03210
Solanaceae	Lycium barbarum	1	gene-LOC132609713
Solanaceae	Solanum chilense	1	SOLCI002820400
Solanaceae	Solanum pennellii	1	gene-LOC107028660
Tamaricaceae	Reaumuria soongarica	1	gene_15512
Tamaricaceae	Tamarix chinensis	1	TC09G0488
Zosteraceae	Zostera marina	1	Zosma02g02750.v3.1