Basic Information
Locus ID:
gene-BS78_04G223200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 36769869 | 36783033 | + | gene-BS78_04G223200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 141,255.31 Da | 50.91 | 79.60 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 123 | 164 | 6.81454E-23 | - |
| CDD | cd01989 | STK_N | 261 | 417 | 3.58856E-35 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1184 | 1224 | 4.92457E-20 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 897 | 1094 | 1.7E-27 | IPR001245 |
| Pfam | PF04564 | U-box domain | 119 | 169 | 2.2E-9 | IPR003613 |
| Pfam | PF04564 | U-box domain | 1181 | 1249 | 5.4E-16 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 87 | 1.31E-10 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 274 | 381 | 6.59E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1173 | 1249 | 5.21E-23 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 170 | 9.71E-15 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 874 | 1104 | 2.97E-46 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 262 | 411 | 1.9E-5 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 105 | 2.7E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1179 | 1251 | 6.8E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 174 | 1.1E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 870 | 964 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 965 | 1175 | 2.8E-32 | - |
| SMART | SM00504 | Ubox_2 | 122 | 190 | 9.7E-14 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 1183 | 1245 | 3.7E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1179 | 1252 | 25.680834 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 892 | 1184 | 23.665276 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 118 | 197 | 18.639656 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 98 | 9.658483 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 225 | - | - |
| Coils | Coil | Coil | 759 | 779 | - | - |
| Coils | Coil | Coil | 787 | 807 | - | - |
| Coils | Coil | Coil | 610 | 630 | - | - |
| Coils | Coil | Coil | 816 | 857 | - | - |
| Coils | Coil | Coil | 695 | 743 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PL03 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS28368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |