Basic Information
Locus ID:
gene-BS78_04G208200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 35613886 | 35618542 | - | gene-BS78_04G208200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 25,894.71 Da | 73.05 | 75.40 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 29 | 78 | 4.45589E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 31 | 76 | 1.5E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 89 | 3.31E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 97 | 4.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 31 | 76 | 8.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 31 | 77 | 12.681067 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 46 | 55 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_039851870.1 | E3 ubiquitin-protein ligase RMA3-like [Panicum virgatum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0XSQ1 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1KG408700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology