Basic Information
Locus ID:
gene-BS78_04G207700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 35567550 | 35578743 | + | gene-BS78_04G207700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 103,865.24 Da | 56.51 | 75.44 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 367 | 6.4E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 702 | 758 | 1.7E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 3.75E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 698 | 759 | 2.98E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 822 | 893 | 2.32E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 699 | 775 | 2.6E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 395 | 4.0E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 200 | 374 | 1.2E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 821 | 888 | 0.052 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 695 | 759 | 3.0E-4 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.291658 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 723 | 760 | 11.309919 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 820 | 889 | 9.877619 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 684 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_002452510.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sorghum bicolor] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | C5XY97 | protein-serine/threonine phosphatase OS=Sorghum bicolor OX=4558 GN=SORBI_3004G227600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology