Basic Information
Locus ID:
gene-BS78_04G207600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 35553464 | 35558614 | + | gene-BS78_04G207600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 88,226.19 Da | 54.48 | 63.70 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 318 | 643 | 7.13217E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 508 | 8.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 465 | 3.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 609 | 642 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 353 | 3.0E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 316 | 647 | 3.21E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 422 | 687 | 2.2E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 279 | 420 | 8.9E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 315 | 354 | 3.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 601 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 643 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 4.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 549 | 2.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 322 | 355 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 475 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 435 | 469 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 322 | 355 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 475 | 509 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 509 | 12.212779 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 341 | 355 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 495 | 509 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 341 | 355 | 2.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 245 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034603598.1 | WD repeat-containing protein 44-like [Setaria viridis] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q3Z3 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS33921 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology