Basic Information
Locus ID:
gene-BS78_04G194200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 34240129 | 34247275 | - | gene-BS78_04G194200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 87,837.29 Da | 45.90 | 60.47 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 571 | 618 | 9.03E-9 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 43 | 243 | 6.91E-8 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 28 | 282 | 2.0E-5 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 565 | 618 | 4.8E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 569 | - | - |
| Coils | Coil | Coil | 35 | 55 | - | - |
| Coils | Coil | Coil | 7 | 27 | - | - |
| Coils | Coil | Coil | 494 | 514 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_025804875.1 | ABC transporter F family member 4-like isoform X1 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PLV0 | Tudor domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS28648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology