Basic Information
Locus ID:
gene-BS78_04G178700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 32839747 | 32845949 | + | gene-BS78_04G178700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 80,762.24 Da | 38.41 | 91.82 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 356 | 657 | 3.81653E-160 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 339 | 1.2573E-170 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 361 | 653 | 6.8E-42 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 355 | 657 | 1.73E-49 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 338 | 4.19E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 658 | 5.6E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 339 | 1.8E-27 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 356 | 658 | 38.982227 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 340 | 29.912077 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_034598637.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Setaria viridis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WBC0 | glycerophosphodiester phosphodiesterase OS=Setaria viridis OX=4556 GN=SEVIR_1G217600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology