Basic Information
Locus ID:
gene-BS78_04G171100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 32138531 | 32140182 | - | gene-BS78_04G171100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 38,000.42 Da | 69.53 | 81.80 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 122 | 165 | 1.61695E-18 | - |
| Pfam | PF13639 | Ring finger domain | 122 | 165 | 8.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 174 | 2.32E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 170 | 9.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 164 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 165 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 87 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001149492.2 | RING-H2 finger protein ATL3B precursor [Zea mays] | 0 |
| Q8GW38 | RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835BC29 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_038927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2290, BH06.2109, CH07.2182 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134800, gene-QOZ80_2BG0190410 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0314400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022959, gene-QYE76_023123 |
| Poaceae | Oryza coarctata | 1 | Oco04G013130 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g36320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G171100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009350, Chr09G013690, Chr13G009540, Chr15G010870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G726900, Tel5E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064960, gene_TRIDC3BG073300 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G459700.1, TraesCS3B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20683 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13737 |