Basic Information
Locus ID:
gene-BS78_04G165300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 31606166 | 31607536 | - | gene-BS78_04G165300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 21,178.12 Da | 71.66 | 74.92 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 104 | 147 | 5.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 154 | 5.89E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 155 | 2.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 146 | 4.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 147 | 11.943417 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 201 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_002454014.2 | E3 ubiquitin-protein ligase EL5 [Sorghum bicolor] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368PMH8 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_1G197400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology