halophFGD

Basic Information

Locus ID: gene-BS78_04G155300

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	30384437	30386186	-	gene-BS78_04G155300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.66	46,056.76 Da	50.63	101.31	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	19	61	4.24174E-24	-
Pfam	PF04564	U-box domain	15	89	6.5E-20	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	4	94	3.02E-28	-
SUPERFAMILY	SSF48371	ARM repeat	210	392	4.61E-16	IPR016024
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	2	93	2.0E-28	IPR013083
Gene3D	G3DSA:1.25.10.10	-	117	422	3.2E-16	IPR011989
SMART	SM00504	Ubox_2	18	84	1.0E-31	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	14	91	38.489407	IPR003613

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G35930.1	plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.
RefSeq	XP_004952676.1	E3 ubiquitin-protein ligase PUB23 [Setaria italica]
Swiss-Prot	Q84TG3	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1
TrEMBL	A0A3L6RPQ6	RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G07170 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg15140, jg15141, jg29567, jg31920, jg31921, jg36048, jg3658 ... jg36049, jg37634, jg37635, jg8106, jg8107
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15245, gene_5728, gene_6859
Amaranthaceae	Atriplex hortensis	6	Ah003138, Ah003139, Ah003140, Ah003141, Ah027734, Ah027735
Amaranthaceae	Beta vulgaris	4	BVRB_5g108520, BVRB_5g108540, BVRB_7g171170, BVRB_7g171180
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15716, Sbi_jg26483, Sbi_jg26484, Sbi_jg34079 ... Sbi_jg34080, Sbi_jg56518
Amaranthaceae	Salicornia europaea	3	Seu_jg13742, Seu_jg15017, Seu_jg15018
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001811, GOSA_00001813
Amaranthaceae	Suaeda glauca	4	Sgl51464, Sgl51465, Sgl56752, Sgl56753
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000004196, gene:ENSEOMG00000006108 ... gene:ENSEOMG00000006169, gene:ENSEOMG00000006481, gene:ENSEOMG00000021705, gene:ENSEOMG00000023512, gene:ENSEOMG00000024384, gene:ENSEOMG00000025405, gene:ENSEOMG00000037919, gene:ENSEOMG00000039295
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.5AG0011090, CQ.Regalona.r1.5AG0011110 ... CQ.Regalona.r1.5BG0011590, CQ.Regalona.r1.5BG0011610, CQ.Regalona.r1.7AG0005410, CQ.Regalona.r1.7AG0005420, CQ.Regalona.r1.9BG0000400, CQ.Regalona.r1.9BG0000410, CQ.Regalona.r1.9BG0000420
Apiaceae	Apium graveolens	8	Ag10G01682, Ag10G01683, Ag10G02093, Ag10G02094, Ag10G02095 ... Ag10G02096, Ag2G01821, Ag2G01883
Arecaceae	Cocos nucifera	6	COCNU_01G018760, COCNU_01G018770, COCNU_09G001680 ... COCNU_11G000520, COCNU_15G001290, COCNU_15G001300
Arecaceae	Phoenix dactylifera	6	gene-LOC103695509, gene-LOC103703151, gene-LOC103704327 ... gene-LOC103710109, gene-LOC103714294, gene-LOC103714316
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.745.V1.1, AsparagusV1_04.746.V1.1 ... AsparagusV1_09.138.V1.1
Asteraceae	Flaveria trinervia	12	Ftri11G28535, Ftri11G29175, Ftri12G27196, Ftri16G29824 ... Ftri17G17155, Ftri17G20105, Ftri2G33367, Ftri8G15003, Ftri9G14724, Ftri9G23012, FtriNA00046, FtriNA28455
Brassicaceae	Arabidopsis thaliana	3	AT2G35930.1, AT3G11840.1, AT3G52450.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10010389m.g.v1.0, Thhalv10016730m.g.v1.0 ... Thhalv10020668m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g10070.v2.2, Sp4g18180.v2.2, Sp5g09850.v2.2
Brassicaceae	Brassica nigra	10	BniB01g008460.2N, BniB01g008510.2N, BniB01g053150.2N ... BniB02g074170.2N, BniB06g008190.2N, BniB06g066490.2N, BniB07g025590.2N, BniB07g056750.2N, BniB08g022640.2N, BniB08g066770.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0792, Ceq05G1879, Ceq05G1880
Casuarinaceae	Casuarina glauca	2	Cgl04G0899, Cgl05G1870
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno07g00870, gene.Cymno08g03690, gene.Cymno08g08270 ... gene.Cymno08g08280, gene.Cymno10g10400
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g14200, gene.Thate06g10260, gene.Thate08g17980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-447, nbisL1-mrna-8522
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1902, evm.TU.LG09.568, evm.TU.LG09.569
Plantaginaceae	Plantago ovata	3	Pov_00015699, Pov_00015700, Pov_00026587
Poaceae	Echinochloa crus-galli	14	AH02.3984, AH05.259, AH07.2109, AH09.2776, AH09.953 ... BH02.4003, BH05.301, BH07.2067, BH09.1024, BH09.3013, CH05.352, CH07.1914, CH09.1157, CH09.3179
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0040980, gene-QOZ80_1BG0091030 ... gene-QOZ80_2BG0188660, gene-QOZ80_4AG0298690, gene-QOZ80_4AG0318110, gene-QOZ80_4BG0329390, gene-QOZ80_4BG0349480, gene-QOZ80_5AG0382340, gene-QOZ80_5BG0429300
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0167350.1.CDS1 ... HORVU.MOREX.r3.2HG0213610.1.CDS1, HORVU.MOREX.r3.3HG0299890.1.CDS1, HORVU.MOREX.r3.6HG0574110.1.CDS1, HORVU.MOREX.r3.6HG0628340.1.CDS1, HORVU.MOREX.r3.6HG0628400.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_002952, gene-QYE76_018097, gene-QYE76_022792 ... gene-QYE76_022794, gene-QYE76_043938, gene-QYE76_047626, gene-QYE76_056715, gene-QYE76_056721
Poaceae	Oryza coarctata	10	Oco01G025730, Oco02G026660, Oco03G011890, Oco04G012320 ... Oco07G005490, Oco07G019810, Oco08G005500, Oco08G019080, Oco23G002280, Oco24G001830
Poaceae	Oryza sativa	5	LOC_Os01g64570.1, LOC_Os02g33590.1, LOC_Os04g34030.1 ... LOC_Os04g58920.1, LOC_Os12g06410.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G178000, gene-BS78_03G347500 ... gene-BS78_04G155300, gene-BS78_06G089700, gene-BS78_06G291400, gene-BS78_08G033200
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0200910, Pt_Chr0200914, Pt_Chr0300057, Pt_Chr0302741 ... Pt_Chr0302784, Pt_Chr0601314, Pt_Chr0601340
Poaceae	Sporobolus alterniflorus	11	Chr03G020900, Chr04G022610, Chr06G010370, Chr06G024380 ... Chr08G021420, Chr09G014910, Chr15G011840, Chr23G000460, Chr23G013390, Chr26G006300, Chr26G018760
Poaceae	Thinopyrum elongatum	7	Tel2E01G528000, Tel2E01G978000, Tel3E01G602100 ... Tel6E01G355300, Tel6E01G690900, Tel6E01G691000, Tel6E01G692100
Poaceae	Triticum dicoccoides	11	gene_TRIDC2AG043180, gene_TRIDC2BG046000 ... gene_TRIDC2BG087150, gene_TRIDC3AG054040, gene_TRIDC3BG060720, gene_TRIDC6AG025840, gene_TRIDC6AG056870, gene_TRIDC6AG056930, gene_TRIDC6BG032080, gene_TRIDC6BG066330, gene_TRIDC6BG066420
Poaceae	Triticum aestivum	19	TraesCS2A02G298000.1.cds1, TraesCS2B02G314500.1.cds1 ... TraesCS2B02G601300.1.cds1, TraesCS2D02G296100.1.cds1, TraesCS2D02G594700.1.cds1, TraesCS3A02G376900.1.cds1, TraesCS3B02G409400.1.cds1, TraesCS3D02G370000.1.cds1, TraesCS6A02G176800.1.cds1, TraesCS6A02G382300.1.cds1, TraesCS6A02G382800.1.cds1, TraesCS6B02G209000.1.cds1, TraesCS6B02G420600.1.cds1, TraesCS6B02G421400.1.cds1, TraesCS6B02G421900.1.cds1, TraesCS6D02G167300.1.cds1, TraesCS6D02G367100.1.cds1, TraesCS6D02G367600.1.cds1, TraesCSU02G036400.1.cds1
Poaceae	Zea mays	4	Zm00001eb065620_P001, Zm00001eb083490_P001 ... Zm00001eb146830_P001, Zm00001eb243070_P001
Poaceae	Zoysia japonica	6	nbis-gene-20790, nbis-gene-25586, nbis-gene-28644 ... nbis-gene-43055, nbis-gene-6249, nbis-gene-7706
Poaceae	Zoysia macrostachya	5	Zma_g11610, Zma_g13648, Zma_g21258, Zma_g22274, Zma_g24775
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.2779, evm.TU.LG14.166, evm.TU.LG16.886 ... evm.TU.LG19.1121, evm.TU.LG19.1122, evm.TU.LG24.1122, evm.TU.LG24.1123
Posidoniaceae	Posidonia oceanica	6	gene.Posoc05g16590, gene.Posoc05g21250, gene.Posoc05g21270 ... gene.Posoc05g21290, gene.Posoc06g11430, gene.Posoc08g08760
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_12_RagTag.502, evm.TU.Scaffold_13_RagTag.546 ... evm.TU.Scaffold_13_RagTag.548, evm.TU.Scaffold_1_RagTag.1329, evm.TU.Scaffold_1_RagTag.1330, evm.TU.Scaffold_2_RagTag.1058, evm.TU.Scaffold_2_RagTag.1059
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-30534, nbisL1-mrna-30540, nbisL1-mrna-4129 ... nbisL1-mrna-4132, nbisL1-mrna-4133, nbisL1-mrna-6268, nbisL1-mrna-6269
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-10002, nbisL1-mrna-10922, nbisL1-mrna-12696 ... nbisL1-mrna-12697, nbisL1-mrna-18161, nbisL1-mrna-18162, nbisL1-mrna-922
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10159, nbisL1-mrna-15935, nbisL1-mrna-19758 ... nbisL1-mrna-4113, nbisL1-mrna-4114
Rhizophoraceae	Kandelia candel	7	add.evm.TU.utg000009l.218, add.evm.TU.utg000009l.219 ... add.evm.TU.utg000015l.117, add.evm.TU.utg000015l.118, add.evm.TU.utg000016l.158, add.evm.TU.utg000016l.159, add.evm.TU.utg000027l.120
Rhizophoraceae	Kandelia obovata	1	Maker00016385
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-18407, nbisL1-mrna-18408, nbisL1-mrna-19786 ... nbisL1-mrna-19787, nbisL1-mrna-21797, nbisL1-mrna-21798
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-13505, nbisL1-mrna-13506, nbisL1-mrna-15246 ... nbisL1-mrna-5692, nbisL1-mrna-5693, nbisL1-mrna-8962, nbisL1-mrna-8964
Salicaceae	Populus euphratica	10	populus_peu12406, populus_peu12407, populus_peu25841 ... populus_peu25844, populus_peu25965, populus_peu25966, populus_peu27536, populus_peu31525, populus_peu35523, populus_peu35524
Solanaceae	Lycium barbarum	14	gene-LOC132599499, gene-LOC132600638, gene-LOC132624657 ... gene-LOC132624699, gene-LOC132625924, gene-LOC132625925, gene-LOC132625926, gene-LOC132625929, gene-LOC132626171, gene-LOC132629235, gene-LOC132629236, gene-LOC132629238, gene-LOC132629395, gene-LOC132629397
Solanaceae	Solanum chilense	6	SOLCI001911800, SOLCI002001200, SOLCI006022200 ... SOLCI006290800, SOLCI007075800, SOLCI007440700
Solanaceae	Solanum pennellii	10	gene-LOC107003505, gene-LOC107005160, gene-LOC107014919 ... gene-LOC107015434, gene-LOC107016477, gene-LOC107022843, gene-LOC107023180, gene-LOC107023258, gene-LOC107030401, gene-LOC107030938
Tamaricaceae	Reaumuria soongarica	3	STRG.26375_chr11_+, gene_12201, gene_1274
Tamaricaceae	Tamarix chinensis	3	TC03G1685, TC03G1689, TC05G2736
Zosteraceae	Zostera marina	3	Zosma01g21400.v3.1, Zosma02g01770.v3.1, Zosma04g23700.v3.1