Basic Information
Locus ID:
gene-BS78_04G148100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 29343146 | 29346047 | - | gene-BS78_04G148100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 44,103.21 Da | 38.69 | 75.39 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 206 | 237 | 0.095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 346 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 352 | 2.6E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 412 | 5.7E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 80 | 121 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 196 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 349 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 246 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 349 | 8.518333 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 333 | 347 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | NP_001169326.1 | WD40 repeat protein [Zea mays] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811PY77 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS34630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology