Basic Information
Locus ID:
gene-BS78_04G137700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 26718458 | 26720396 | + | gene-BS78_04G137700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 26,055.24 Da | 40.27 | 90.99 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 220 | 6.54E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 224 | 1.7E-7 | IPR015943 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40810.1 | homolog of yeast autophagy 18C. | 0 |
| RefSeq | XP_021309304.1 | autophagy-related protein 18a-like [Sorghum bicolor] | 0 |
| Q8GYD7 | Autophagy-related protein 18c OS=Arabidopsis thaliana OX=3702 GN=ATG18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6W1W0 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G438500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2345, BH03.4349, BH03.4350, CH07.167 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0244420, gene-QOZ80_3BG0283610 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G137700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G012750 |