Basic Information
Locus ID:
gene-BS78_04G136600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 26604529 | 26609371 | + | gene-BS78_04G136600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 63,263.77 Da | 51.22 | 87.30 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 195 | 253 | 1.3E-7 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 253 | 2.56E-11 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 290 | 480 | 9.05E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 273 | 502 | 8.5E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 256 | 9.2E-11 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 193 | 249 | 0.0029 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 129 | - | - |
| Coils | Coil | Coil | 21 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23030.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004954929.1 | U-box domain-containing protein 73 [Setaria italica] | 0 |
| Q6K762 | U-box domain-containing protein 73 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB73 PE=2 SV=1 | 0 | |
| TrEMBL | K3YYF1 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101759787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.1783, AH07.1785, BH07.1769, BH07.1771, CH07.1622 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0131120, gene-QOZ80_2BG0186460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0498340.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023227, gene-QYE76_044206 |
| Poaceae | Oryza coarctata | 1 | Oco04G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g28870.1, LOC_Os02g29300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G136600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204338 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G027990 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G225800, Tel5E01G505800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG046970, gene_TRIDC5BG050810 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G317300.1, TraesCS5B02G317900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb241220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20964 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13528 |