Basic Information
Locus ID:
gene-BS78_04G136300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 26551714 | 26553028 | - | gene-BS78_04G136300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 38,662.36 Da | 48.02 | 80.57 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 289 | 329 | 1.3E-7 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 181 | 200 | 3.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 107 | 121 | 10.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 140 | 178 | 0.0086 | IPR006597 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 284 | 335 | 2.27E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 98 | 200 | 7.72E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 91 | 206 | 1.1E-12 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 281 | 333 | 4.3E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 287 | 329 | 11.291552 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_039787166.1 | F-box protein At1g67340-like [Panicum virgatum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0WZE8 | MYND-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG388900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology